Software tools - Revision history

Admin: /* Text editing tools */

2025-10-02T20:12:25Z

Text editing tools

← Older revision		Revision as of 22:12, 2 October 2025
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	** [https://3142.nl/latex-diff/ LatexDiff], to compare different versions of a document and highlight changes		** [https://3142.nl/latex-diff/ LatexDiff], to compare different versions of a document and highlight changes
	* [http://www.gnu.org/software/emacs/ Emacs], powerful plain text editor		* [http://www.gnu.org/software/emacs/ Emacs], powerful plain text editor
	* [~~http~~://www.barebones.com/products/~~textwrangler~~/ ~~TextWrangler~~], powerful plain text editor for Mac		* [https://www.barebones.com/products/bbedit/ BBEdit], powerful plain text editor for Mac
	* [https://www.libreoffice.org/ LibreOffice], office suite of programs		* [https://www.libreoffice.org/ LibreOffice], office suite of programs
	* [https://www.authorea.com/ Authorea], a power collaborative writing website		* [https://www.authorea.com/ Authorea], a power collaborative writing website

Admin: /* Emulation, file management */

2025-10-02T20:11:35Z

Emulation, file management

← Older revision		Revision as of 22:11, 2 October 2025
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	* [http://mobaxterm.mobatek.net/ MobaXterm] X-window system for Windows		* [http://mobaxterm.mobatek.net/ MobaXterm] X-window system for Windows
	* [http://www.chiark.greenend.org.uk/~sgtatham/putty/ PuTTY] Telnet/SSH client for Windows and Unix		* [http://www.chiark.greenend.org.uk/~sgtatham/putty/ PuTTY] Telnet/SSH client for Windows and Unix
	* [~~http~~://~~rsug~~.~~itd.umich.edu/software/fugu~~/ ~~Fugu~~] Secure File Transfer ~~for Mac~~		* [https://filezilla-project.org/ FileZilla] Secure File Transfer

	== Numerical tools and libraries ==		== Numerical tools and libraries ==

Admin: /* Mathematical tools */

2025-10-02T20:09:03Z

Mathematical tools

← Older revision		Revision as of 22:09, 2 October 2025
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	== Mathematical tools ==		== Mathematical tools ==

	* [https://mathics.angusgriffith.com/ Mathics], a free alternative to [http://www.wolfram.com/mathematica/ Mathematica]
	* [http://live.sympy.org/ SymPy], symbolic calculus using Python		* [http://live.sympy.org/ SymPy], symbolic calculus using Python
	* [http://people.math.sfu.ca/~cbm/aands/ Abramowitz and Stegun: Handbook of Mathematical Functions]		* [http://people.math.sfu.ca/~cbm/aands/ Abramowitz and Stegun: Handbook of Mathematical Functions]

Admin: /* Mathematical tools */

2018-11-18T19:34:09Z

Mathematical tools

← Older revision		Revision as of 21:34, 18 November 2018
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	== Mathematical tools ==		== Mathematical tools ==

	* [~~http~~://~~www~~.~~mathics~~.~~org~~/ Mathics], a free alternative to [http://www.wolfram.com/mathematica/ Mathematica]		* [https://mathics.angusgriffith.com/ Mathics], a free alternative to [http://www.wolfram.com/mathematica/ Mathematica]
	* [http://live.sympy.org/ SymPy], symbolic calculus using Python		* [http://live.sympy.org/ SymPy], symbolic calculus using Python
	* [http://people.math.sfu.ca/~cbm/aands/ Abramowitz and Stegun: Handbook of Mathematical Functions]		* [http://people.math.sfu.ca/~cbm/aands/ Abramowitz and Stegun: Handbook of Mathematical Functions]

Admin: /* Text editing tools */

2018-08-09T10:17:44Z

Text editing tools

← Older revision		Revision as of 12:17, 9 August 2018
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	** [http://www.chachatelier.fr/latexit/ LaTeXiT], compiles LaTeX formulas for presentations for Mac		** [http://www.chachatelier.fr/latexit/ LaTeXiT], compiles LaTeX formulas for presentations for Mac
	** [https://www.sharelatex.com ShareLaTeX] and [https://www.overleaf.com/ Overleaf], collaborative writing websites for LaTeX		** [https://www.sharelatex.com ShareLaTeX] and [https://www.overleaf.com/ Overleaf], collaborative writing websites for LaTeX
			** [https://3142.nl/latex-diff/ LatexDiff], to compare different versions of a document and highlight changes
	* [http://www.gnu.org/software/emacs/ Emacs], powerful plain text editor		* [http://www.gnu.org/software/emacs/ Emacs], powerful plain text editor
	* [http://www.barebones.com/products/textwrangler/ TextWrangler], powerful plain text editor for Mac		* [http://www.barebones.com/products/textwrangler/ TextWrangler], powerful plain text editor for Mac

Namurphy: /* Graphical tools */

2017-09-11T16:56:03Z

Graphical tools

← Older revision		Revision as of 18:56, 11 September 2017
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	* [http://rsb.info.nih.gov/ij/features.html ImageJ], graphics editor and image analysis		* [http://rsb.info.nih.gov/ij/features.html ImageJ], graphics editor and image analysis
	* [https://inkscape.org/ InkScape], [[:Wikipedia:vector graphics\|vector graphics]] editor		* [https://inkscape.org/ InkScape], [[:Wikipedia:vector graphics\|vector graphics]] editor
			* [https://wci.llnl.gov/simulation/computer-codes/visit/ VisIt], an open Source, interactive, scalable, visualization, animation and analysis tool

	== Text editing tools ==		== Text editing tools ==

Namurphy: /* Text editing tools */ Add collaborative writing websites

2017-09-11T16:54:55Z

Text editing tools: Add collaborative writing websites

← Older revision		Revision as of 18:54, 11 September 2017
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	** [http://bibdesk.sourceforge.net/ BibDesk], bibliography manager for Mac		** [http://bibdesk.sourceforge.net/ BibDesk], bibliography manager for Mac
	** [http://www.chachatelier.fr/latexit/ LaTeXiT], compiles LaTeX formulas for presentations for Mac		** [http://www.chachatelier.fr/latexit/ LaTeXiT], compiles LaTeX formulas for presentations for Mac
			** [https://www.sharelatex.com ShareLaTeX] and [https://www.overleaf.com/ Overleaf], collaborative writing websites for LaTeX
	* [http://www.gnu.org/software/emacs/ Emacs], powerful plain text editor		* [http://www.gnu.org/software/emacs/ Emacs], powerful plain text editor
	* [http://www.barebones.com/products/textwrangler/ TextWrangler], powerful plain text editor for Mac		* [http://www.barebones.com/products/textwrangler/ TextWrangler], powerful plain text editor for Mac
	* [https://www.libreoffice.org/ LibreOffice], office suite of programs		* [https://www.libreoffice.org/ LibreOffice], office suite of programs
			* [https://www.authorea.com/ Authorea], a power collaborative writing website

	== See also ==		== See also ==

Namurphy: /* Numerical tools and libraries */ Add packages and update web addresses of Python packages

2017-09-11T16:51:27Z

Numerical tools and libraries: Add packages and update web addresses of Python packages

← Older revision		Revision as of 18:51, 11 September 2017
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	== Numerical tools and libraries ==		== Numerical tools and libraries ==

	* [~~http~~://www.nr.com/ Numerical Recipes]		* [https://www.nr.com/ Numerical Recipes]
	* [https://gcc.gnu.org/wiki/GFortran GNU Fortran]		* [https://gcc.gnu.org/wiki/GFortran GNU Fortran]
	* [~~http~~://www.gnu.org/software/octave/ Octave], a free alternative to [http://www.mathworks.com/products/matlab/ Matlab]		* [https://www.gnu.org/software/octave/ Octave], a free alternative to [http://www.mathworks.com/products/matlab/ Matlab]
	* [https://www.python.org/ Python], a programming language		* [https://www.python.org/ Python], a programming language
	** [https://www.enthought.com/products/canopy/ Canopy] Scientific and Analytic Python Deployment with Integrated Analysis Environment		** [https://www.enthought.com/products/canopy/ Canopy] Scientific and Analytic Python Deployment with Integrated Analysis Environment
	** [~~http~~://docs.~~continuum~~.io/anaconda/ Anaconda] Python distribution for large-scale data processing, predictive analytics, and scientific computing		** [https://docs.anaconda.com/anaconda/ Anaconda] Python distribution for large-scale data processing, predictive analytics, and scientific computing
	** [~~http~~://www.sagemath.org/ SageMath] Free open-source mathematics software system licensed under the GPL. Its mission is to create a viable free open source alternative to Magma, Maple, Mathematica and Matlab		** [https://www.sagemath.org/ SageMath] Free open-source mathematics software system licensed under the GPL. Its mission is to create a viable free open source alternative to Magma, Maple, Mathematica and Matlab
	** [http://ipython.org/ IPython] Powerful ~~interactive shells and~~ browser-based notebook for Python		** [https://jupyter.org/ Jupyter] and [http://ipython.org/ IPython] Powerful browser-based notebook and interactive shells for Python and other languages
	** [~~http~~://~~docs~~.~~scipy~~.org~~/doc~~/ NumPy and Scipy] Fundamental packages for scientific computing with Python		** [https://www.numpy.org/ NumPy] and [https://www.scipy.org/ Scipy] Fundamental packages for scientific computing with Python
	** [~~http~~://matplotlib.org/ matplotlib] A python ~~2D (and 3D basic support)~~ plotting library ~~which~~ produces publication quality figures		** [https://matplotlib.org/ matplotlib] A python plotting library that produces publication quality figures
	** [~~http~~://~~stanford~~.~~edu/~mwaskom/software/seaborn~~/ Seaborn] Python visualization library based on matplotlib. It provides a high-level interface for drawing attractive statistical graphics		** [https://seaborn.pydata.org/ Seaborn] Python visualization library based on matplotlib. It provides a high-level interface for drawing attractive statistical graphics
	** [https://~~github~~.~~com~~/spyder~~-ide~~/~~spyder~~ Spyder] Open source cross-platform Integrated Development Environment for scientific programming in the Python language. Spyder integrates NumPy, SciPy, Matplotlib and IPython, as well as other open source software		** [https://pythonhosted.org/spyder/ Spyder] Open source cross-platform Integrated Development Environment for scientific programming in the Python language. Spyder integrates NumPy, SciPy, Matplotlib and IPython, as well as other open source software
	** [https://www.jetbrains.com/pycharm/ PyCharm] PyCharm is an Integrated Development Environment used for programming in Python. It provides code analysis, a graphical debugger, an integrated unit tester, integration with version control systems, and supports web development with Django		** [https://www.jetbrains.com/pycharm/ PyCharm] PyCharm is an Integrated Development Environment used for programming in Python. It provides code analysis, a graphical debugger, an integrated unit tester, integration with version control systems, and supports web development with Django
	** [http://vpython.org/ VPython] Python programming language plus a 3D graphics module called "visual". VPython makes it easy to create navigable 3D displays and animations		** [http://vpython.org/ VPython] Python programming language plus a 3D graphics module called "visual". VPython makes it easy to create navigable 3D displays and animations
	** [http://docs.enthought.com/mayavi/mayavi/ Mayavi] An application and library for interactive scientific data visualization and 3D plotting in Python		** [http://docs.enthought.com/mayavi/mayavi/ Mayavi] An application and library for interactive scientific data visualization and 3D plotting in Python
			** [https://yt-project.org/ yt] An open-source python package for analyzing and visualizing volumetric data
			** [https://pandas.pydata.org/ pandas] and [http://xarray.pydata.org/en/stable/ xarray] Easy-to-use data structures and data analysis tools for Python
			** [http://www.pytables.org/ pytables] and [http://www.h5py.org/ h5py] Tools for using HDF5 data in Python
			** [http://cython.org/ Cython] and [https://numba.pydata.org/ Numba] Tools that allow compiled speeds in Python
			** [https://gafusion.github.io/OMFIT-source/ OMFIT] Software that supports integrated modeling and experimental data analysis of magnetically confined thermonuclear fusion experiments.
			** [https://github.com/PlasmaPy/PlasmaPy/ PlasmaPy] An open source core Python package for plasma physics that is under development

	== Mathematical tools ==		== Mathematical tools ==

Admin: /* Emulation, file management */

2015-06-10T09:50:40Z

Emulation, file management

← Older revision		Revision as of 11:50, 10 June 2015
Line 4:		Line 4:

	* [http://xquartz.macosforge.org/landing/ XQuartz] X-window system for Mac		* [http://xquartz.macosforge.org/landing/ XQuartz] X-window system for Mac
			* [http://mobaxterm.mobatek.net/ MobaXterm] X-window system for Windows
	* [http://www.chiark.greenend.org.uk/~sgtatham/putty/ PuTTY] Telnet/SSH client for Windows and Unix		* [http://www.chiark.greenend.org.uk/~sgtatham/putty/ PuTTY] Telnet/SSH client for Windows and Unix
	* [http://rsug.itd.umich.edu/software/fugu/ Fugu] Secure File Transfer for Mac		* [http://rsug.itd.umich.edu/software/fugu/ Fugu] Secure File Transfer for Mac

Alfonso: /* Numerical tools and libraries */

2015-06-03T09:37:32Z

Numerical tools and libraries

← Older revision		Revision as of 11:37, 3 June 2015
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	** [https://github.com/spyder-ide/spyder Spyder] Open source cross-platform Integrated Development Environment for scientific programming in the Python language. Spyder integrates NumPy, SciPy, Matplotlib and IPython, as well as other open source software		** [https://github.com/spyder-ide/spyder Spyder] Open source cross-platform Integrated Development Environment for scientific programming in the Python language. Spyder integrates NumPy, SciPy, Matplotlib and IPython, as well as other open source software
	** [https://www.jetbrains.com/pycharm/ PyCharm] PyCharm is an Integrated Development Environment used for programming in Python. It provides code analysis, a graphical debugger, an integrated unit tester, integration with version control systems, and supports web development with Django		** [https://www.jetbrains.com/pycharm/ PyCharm] PyCharm is an Integrated Development Environment used for programming in Python. It provides code analysis, a graphical debugger, an integrated unit tester, integration with version control systems, and supports web development with Django
			** [http://vpython.org/ VPython] Python programming language plus a 3D graphics module called "visual". VPython makes it easy to create navigable 3D displays and animations
			** [http://docs.enthought.com/mayavi/mayavi/ Mayavi] An application and library for interactive scientific data visualization and 3D plotting in Python

	== Mathematical tools ==		== Mathematical tools ==